Publications

Found 73 results
2016
Chaffin AS, Huang Y-F, Smith S, Bekele WA, Babiker E, Gnanesh BN, Foresman BJ, Blanchard SG, Jay JJ, Reid RW et al..  2016.  A Consensus Map in Cultivated Hexaploid Oat Reveals Conserved Grass Synteny with Substantial Subgenome Rearrangement.. Plant Genome. 9(2)
Bubier JA, Wilcox TD, Jay JJ, Langston MA, Baker EJ, Chesler EJ.  2016.  Cross-Species Integrative Functional Genomics in GeneWeaver Reveals a Role for Pafah1b1 in Altered Response to Alcohol.. Front Behav Neurosci. 10:1.
Janies DA, Witter Z, Linchangco GV, Foltz DW, Miller AK, Kerr AM, Jay J, Reid RW, Wray GA.  2016.  EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms.. BMC Bioinformatics. 17:48.
Jay JJ, Brouwer C.  2016.  Lollipops in the Clinic: Information Dense Mutation Plots for Precision Medicine.. PLoS One. 11(8):e0160519.
Cialdella-Kam L, Nieman DC, Knab AM, R Shanely A, Meaney MPat, Jin F, Sha W, Ghosh S.  2016.  A Mixed Flavonoid-Fish Oil Supplement Induces Immune-Enhancing and Anti-Inflammatory Transcriptomic Changes in Adult Obese and Overweight Women-A Randomized Controlled Trial.. Nutrients. 8(5)
Mitchell E.L, Davis A.T, Brass K., Dendinger M., Barner R., Gharaibeh RZ, Fodor AA, Kavanagh K.  2016.  Reduced intestinal motility, mucosal barrier function, and inflammation in aged monkeys. The journal of nutrition, health & aging.
Reid RW, Luo Y, Yan S, Miller TE, Song B-H.  2016.  Transcriptome Dataset of Halophyte Beach Morning Glory, a Close Wild Relative of Sweet Potato.. Front Plant Sci. 7:1267.
Zhu Y, Wang P, Sha W, Sang S.  2016.  Urinary Biomarkers of Whole Grain Wheat Intake Identified by Non-targeted and Targeted Metabolomics Approaches.. Sci Rep. 6:36278.
2015
Stokell JR, Gharaibeh RZ, Hamp TJ, Zapata MJ, Fodor AA, Steck TR.  2015.  Analysis of changes in diversity and abundance of the microbial community in a cystic fibrosis patient over a multiyear period.. J Clin Microbiol. 53(1):237-47.
Reid R, Hall B, Marriott I, El-Ghannam A.  2015.  Early osteoblast responses to orthopedic implants: Synergy of surface roughness and chemistry of bioactive ceramic coating.. J Biomed Mater Res A. 103(6):1961-73.
Brown AF, Yousef GG, Reid RW, Chebrolu KK, Thomas A, Krueger C, Jeffery E, Jackson EW, Juvik JA.  2015.  Genetic analysis of glucosinolate variability in broccoli florets using genome-anchored single nucleotide polymorphisms.. Theor Appl Genet. 128(7):1431-47.
Ray A, Basu S, Gharaibeh RZ, Cook LC, Kumar R, Lefkowitz EJ, Walker CR, Morrow CD, Franklin CL, Geiger TL et al..  2015.  Gut Microbial Dysbiosis Due to Helicobacter Drives an Increase in Marginal Zone B Cells in the Absence of IL-10 Signaling in Macrophages.. J Immunol. 195(7):3071-85.
Muhlebach MS, Sha W.  2015.  Lessons learned from metabolomics in cystic fibrosis.. Mol Cell Pediatr. 2(1):9.
Nieman DC, Gillitt ND, Sha W, Meaney MPat, John C, Pappan KL, Kinchen JM.  2015.  Metabolomics-Based Analysis of Banana and Pear Ingestion on Exercise Performance and Recovery.. J Proteome Res. 14(12):5367-77.
Clouse RM, Linchangco GV, Kerr AM, Reid RW, Janies DA.  2015.  Phylotranscriptomic analysis uncovers a wealth of tissue inhibitor of metalloproteinases variants in echinoderms.. R Soc Open Sci. 2(12):150377.
Gupta V, Estrada AD, Blakley I, Reid R, Patel K, Meyer MD, Andersen SUggerhøj, Brown AF, Lila MAnn, Loraine AE.  2015.  RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing.. Gigascience. 4:5.
2014
Hanna EM, Hamp TJ, McKillop IH, Bahrani-Mougeot F, Martinie JB, Horton JM, Sindram D, Gharaibeh RZ, Fodor AA, Iannitti DA.  2014.  Comparison of culture and molecular techniques for microbial community characterization in infected necrotizing pancreatitis.. J Surg Res. 191(2):362-9.
Knab AM, Nieman DC, Gillitt ND, R Shanely A, Cialdella-Kam L, Henson DA, Sha W, Meaney MPat.  2014.  Effects of a freeze-dried juice blend powder on exercise-induced inflammation, oxidative stress, and immune function in cyclists.. Appl Physiol Nutr Metab. 39(3):381-5.
Brown AF, Yousef GG, Chebrolu KK, Byrd RW, Everhart KW, Thomas A, Reid RW, Parkin IAP, Sharpe AG, Oliver R et al..  2014.  High-density single nucleotide polymorphism (SNP) array mapping in Brassica oleracea: identification of QTL associated with carotenoid variation in broccoli florets.. Theor Appl Genet. 127(9):2051-64.
Nieman DC, Scherr J, Luo B, Meaney MPat, Dréau D, Sha W, Dew DA, Henson DA, Pappan KL.  2014.  Influence of pistachios on performance and exercise-induced inflammation, oxidative stress, immune dysfunction, and metabolite shifts in cyclists: a randomized, crossover trial.. PLoS One. 9(11):e113725.
R Shanely A, Nieman DC, Knab AM, Gillitt ND, Meaney MPat, Jin F, Sha W, Cialdella-Kam L.  2014.  Influence of vitamin D mushroom powder supplementation on exercise-induced muscle damage in vitamin D insufficient high school athletes.. J Sports Sci. 32(7):670-9.
Arthur JC, Gharaibeh RZ, Mühlbauer M, Perez-Chanona E, Uronis JM, McCafferty J, Fodor AA, Jobin C.  2014.  Microbial genomic analysis reveals the essential role of inflammation in bacteria-induced colorectal cancer.. Nat Commun. 5:4724.
Reid RW, Brouwer CR, Jackson EW, Lila MAnn.  2014.  A need for a transdisciplinary environment: the Plant Pathways Elucidation Project.. Trends Plant Sci. 19(8):485-7.
Gruber HE, Sha W, Brouwer CR, Steuerwald N, Hoelscher GL, Hanley EN.  2014.  A novel catechol-O-methyltransferase variant associated with human disc degeneration.. Int J Med Sci. 11(7):748-53.