Publications

Found 91 results
2015
Lambirth KC, Whaley AM, Blakley IC, Schlueter JA, Bost KL, Loraine AE, Piller KJ.  2015.  A Comparison of transgenic and wild type soybean seeds: analysis of transcriptome profiles using RNA-Seq.. BMC Biotechnol. 15:89.
Lambirth KC, Whaley AM, Schlueter JA, Bost KL, Piller KJ.  2015.  CONTRAILS: A tool for rapid identification of transgene integration sites in complex, repetitive genomes using low-coverage paired-end sequencing.. Genom Data. 6:175-81.
Reid RW, Hall B, Marriott I, El-Ghannam A.  2015.  Early osteoblast responses to orthopedic implants: Synergy of surface roughness and chemistry of bioactive ceramic coating.. J Biomed Mater Res A. 103(6):1961-73.
Brown AF, Yousef GG, Reid RW, Chebrolu KK, Thomas A, Krueger C, Jeffery E, Jackson E, Juvik JA.  2015.  Genetic analysis of glucosinolate variability in broccoli florets using genome-anchored single nucleotide polymorphisms.. Theor Appl Genet. 128(7):1431-47.
Ray A, Basu S, Gharaibeh RZ, Cook LC, Kumar R, Lefkowitz EJ, Walker CR, Morrow CD, Franklin CL, Geiger TL et al..  2015.  Gut Microbial Dysbiosis Due to Helicobacter Drives an Increase in Marginal Zone B Cells in the Absence of IL-10 Signaling in Macrophages.. J Immunol. 195(7):3071-85.
Muhlebach MS, Sha W.  2015.  Lessons learned from metabolomics in cystic fibrosis.. Mol Cell Pediatr. 2(1):9.
Nieman DC, Gillitt ND, Sha W, Meaney MPat, John C, Pappan KL, Kinchen JM.  2015.  Metabolomics-Based Analysis of Banana and Pear Ingestion on Exercise Performance and Recovery.. J Proteome Res. 14(12):5367-77.
Clouse RM, Linchangco GV, Kerr AM, Reid RW, Janies DA.  2015.  Phylotranscriptomic analysis uncovers a wealth of tissue inhibitor of metalloproteinases variants in echinoderms.. R Soc Open Sci. 2(12):150377.
Gupta V, Estrada AD, Blakley I, Reid R, Patel K, Meyer MD, Andersen SUggerhøj, Brown AF, Lila MAnn, Loraine AE.  2015.  RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing.. Gigascience. 4:5.
2014
Hanna EM, Hamp TJ, McKillop IH, Bahrani-Mougeot F, Martinie JB, Horton JM, Sindram D, Gharaibeh RZ, Fodor AA, Iannitti DA.  2014.  Comparison of culture and molecular techniques for microbial community characterization in infected necrotizing pancreatitis.. J Surg Res. 191(2):362-9.
Knab AM, Nieman DC, Gillitt ND, R Shanely A, Cialdella-Kam L, Henson D, Sha W, Meaney MPat.  2014.  Effects of a freeze-dried juice blend powder on exercise-induced inflammation, oxidative stress, and immune function in cyclists.. Appl Physiol Nutr Metab. 39(3):381-5.
Brown AF, Yousef GG, Chebrolu KK, Byrd RW, Everhart KW, Thomas A, Reid RW, Parkin IAP, Sharpe AG, Oliver R et al..  2014.  High-density single nucleotide polymorphism (SNP) array mapping in Brassica oleracea: identification of QTL associated with carotenoid variation in broccoli florets.. Theor Appl Genet. 127(9):2051-64.
Nieman DC, Scherr J, Luo B, Meaney MPat, Dréau D, Sha W, Dew DA, Henson DA, Pappan KL.  2014.  Influence of pistachios on performance and exercise-induced inflammation, oxidative stress, immune dysfunction, and metabolite shifts in cyclists: a randomized, crossover trial.. PLoS One. 9(11):e113725.
R Shanely A, Nieman DC, Knab AM, Gillitt ND, Meaney MPat, Jin F, Sha W, Cialdella-Kam L.  2014.  Influence of vitamin D mushroom powder supplementation on exercise-induced muscle damage in vitamin D insufficient high school athletes.. J Sports Sci. 32(7):670-9.
Arthur JC, Gharaibeh RZ, Mühlbauer M, Perez-Chanona E, Uronis JM, McCafferty J, Fodor AA, Jobin C.  2014.  Microbial genomic analysis reveals the essential role of inflammation in bacteria-induced colorectal cancer.. Nat Commun. 5:4724.
Reid RW, Brouwer CR, Jackson EW, Lila MAnn.  2014.  A need for a transdisciplinary environment: the Plant Pathways Elucidation Project.. Trends Plant Sci. 19(8):485-7.
Gruber HE, Sha W, Brouwer CR, Steuerwald N, Hoelscher GL, Hanley EN.  2014.  A novel catechol-O-methyltransferase variant associated with human disc degeneration.. Int J Med Sci. 11(7):748-53.
Joseloff E, Sha W, Bell SC, Wetmore DR, Lawton KA, Milburn MV, Ryals JA, Guo L, Muhlebach MS.  2014.  Serum metabolomics indicate altered cellular energy metabolism in children with cystic fibrosis.. Pediatr Pulmonol. 49(5):463-72.
2013
Nieman DC, R Shanely A, Luo B, Dew D, Meaney MPat, Sha W.  2013.  A commercialized dietary supplement alleviates joint pain in community adults: a double-blind, placebo-controlled community trial.. Nutr J. 12(1):154.
Kavanagh K, Wylie AT, Tucker KL, Hamp TJ, Gharaibeh RZ, Fodor AA, Cullen JMCullen.  2013.  Dietary fructose induces endotoxemia and hepatic injury in calorically controlled primates.. Am J Clin Nutr. 98(2):349-57.
Cialdella-Kam L, Nieman DC, Sha W, Meaney MPat, Knab AM, R Shanely A.  2013.  Dose-response to 3 months of quercetin-containing supplements on metabolite and quercetin conjugate profile in adults.. Br J Nutr. 109(11):1923-33.
Knab AM, Nieman DC, Gillitt ND, R Shanely A, Cialdella-Kam L, Henson DA, Sha W.  2013.  Effects of a flavonoid-rich juice on inflammation, oxidative stress, and immunity in elite swimmers: a metabolomics-based approach.. Int J Sport Nutr Exerc Metab. 23(2):150-60.
Corbin KD, Abdelmalek MF, Spencer MD, da Costa K-A, Galanko JA, Sha W, Suzuki A, Guy CD, Cardona DM, Torquati A et al..  2013.  Genetic signatures in choline and 1-carbon metabolism are associated with the severity of hepatic steatosis.. FASEB J. 27(4):1674-89.
Sha W, Martins AM, Laubenbacher R, Mendes P, Shulaev V.  2013.  The genome-wide early temporal response of Saccharomyces cerevisiae to oxidative stress induced by cumene hydroperoxide.. PLoS One. 8(9):e74939.
Garhyan J, Gharaibeh RZ, McGee S, Gibas CJ.  2013.  The illusion of specific capture: surface and solution studies of suboptimal oligonucleotide hybridization.. BMC Res Notes. 6:72.